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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2412094_2412166_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2412094 - 2412166
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
TCCCTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TGCGCTCCCACT
Flanking Amino Acid:
LTQLHRVIELIEQGMDGSLH
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.3
41.7
Major BPS
50
0
1.2
61.8
35.9
Major PPT
76.6
0.6
0.7
68.8
31.7
Minor 5ss
38.3
-1.3
3
45.9
43.3
Minor BPS
40
-0.7
2.2
57.07
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022793
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037306
2410523 - 2415700
5178