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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_241422_241622_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
241422 - 241622
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTCTTGTTAACA
Flanking Amino Acid:
PKGVMLSHDNLTWTSLAAGR
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
85.3
32.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
80.3
0.68
0.9
76.6
36.3
Minor 5ss
41.7
-0.9
2.8
54.1
36.1
Minor BPS
65.5
0.48
2.1
78.35
38.8

Associated Gene:

Gene:
ACSBG2
Ensembl Gene ID:
ENSAPLG00000004090
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042813
234317 - 247253
12937
ENSAPLT00000038705
230609 - 247253
16645
ENSAPLT00000004245
226475 - 247253
20779