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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_241800_242472_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
241800 - 242472
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTCTTTTGAAT
Flanking Amino Acid:
VFFAQPDALKGTLVDTLREV
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71
0.47
0.9
65.4
35.3
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
57.7
0.32
1.4
72.75
38.4

Associated Gene:

Gene:
ACSBG2
Ensembl Gene ID:
ENSAPLG00000004090
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042813
234317 - 247253
12937
ENSAPLT00000038705
230609 - 247253
16645
ENSAPLT00000004245
226475 - 247253
20779