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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_242655_242921_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
242655 - 242921
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
GTTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTTTCTTCCACA
Flanking Amino Acid:
GLQTNLKWMNGYSEVPVNFR
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.1
35
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.7
0.71
0.8
76.4
32.3
Minor 5ss
34.7
-1.7
2.6
34.1
41.5
Minor BPS
55.9
0.18
2
72.25
39.9

Associated Gene:

Gene:
ACSBG2
Ensembl Gene ID:
ENSAPLG00000004090
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042813
234317 - 247253
12937
ENSAPLT00000038705
230609 - 247253
16645
ENSAPLT00000004245
226475 - 247253
20779