About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2445447_2445937_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
2445447 - 2445937

Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAGTGAA

5'SS Class:
strong_major

3'SS Sequence:
CTCCTTTTTGCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AGCTCAT

U12 Branch Point Sequence:
TATTCTGTCACT

Flanking Amino Acid:
KTDSYRYPRTGSKNPKITLK

Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
96.3
1.09
0.7
86.7
22.1

Major BPS
70.9
0.52
1.1
71.4
36.6

Major PPT
87.7
0.85
0.7
83.2
25.1

Minor 5ss
32
-2.1
3.1
39.9
46.1

Minor BPS
53.1
0.18
2.4
80.6
41.6

Associated Gene:

Gene:
DPP9

Ensembl Gene ID:

Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2434943 - 2455123
20181

2435480 - 2455123
19644