About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2447201_2448258_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
2447201 - 2448258

Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGAGTAAA

5'SS Class:
strong_major

3'SS Sequence:
CTTTCAACACTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTCAA

U12 Branch Point Sequence:
TTTCTTTCAACA

Flanking Amino Acid:
SWKQMLDHFQATPHHGMYSR

Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
93.6
1.03
0.7
88.4
18.8

Major BPS
78.4
0.71
0.9
81.3
29.8

Major PPT
64.7
0.33
0.9
57.6
37.5

Minor 5ss
29.6
-2.3
2.6
32.7
42.2

Minor BPS
65.3
0.48
1.5
76.67
34

Associated Gene:

Gene:
DPP9

Ensembl Gene ID:

Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2435480 - 2455123
19644

2434943 - 2455123
20181