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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2489618_2489948_R

Intron Information:

Intron Rank:
147946
Intron Class:
major
Intron Phase:
Intron Coordinates:
2489618 - 2489948
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
CTTTCTTTCAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
80
0.68
1
79.1
33.3
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
54.1
-0
2
63.96
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026884
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024810
2489614 - 2492923
3310