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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2528900_2529635_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2528900 - 2529635
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ATTTGGTGAGCT
Flanking Amino Acid:
WTDPGFGLYKINDLVDARDM
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
76.1
0.59
0.9
73.1
37.2
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
43.7
-0.4
2.6
71.26
45.4

Associated Gene:

Gene:
UHRF1
Ensembl Gene ID:
ENSAPLG00000014609
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015294
2525829 - 2538627
12799