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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2534096_2534894_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2534096 - 2534894
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCAAC
5'SS Class:
major
3'SS Sequence:
CTTCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
ATGCACTAAACT
Flanking Amino Acid:
SCDQKLTNMNRALALNCSAP
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
64.4
41.8
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
85.7
0.8
0.7
79.7
25.8
Minor 5ss
34.6
-1.7
3
42.8
44.4
Minor BPS
54
0.2
1.9
73.04
43.4

Associated Gene:

Gene:
UHRF1
Ensembl Gene ID:
ENSAPLG00000014609
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015294
2525829 - 2538627
12799