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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2535298_2535684_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2535298 - 2535684
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTGAAT
Flanking Amino Acid:
RMKKLGLTMQYPEGYLEAVA
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
79
37.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
48.7
-0.1
3.1
73.3
43.6
Minor BPS
59
0.36
1.9
81.72
39.6

Associated Gene:

Gene:
UHRF1
Ensembl Gene ID:
ENSAPLG00000014609
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015294
2525829 - 2538627
12799