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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2536517_2537137_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2536517 - 2537137
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTTCTTAACT
Flanking Amino Acid:
TTVCQHNVCKDCLDRSFKAD
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
73.7
0.53
0.9
66.8
39.3
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
89.1
1.31
0.8
97.02
27

Associated Gene:

Gene:
UHRF1
Ensembl Gene ID:
ENSAPLG00000014609
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015294
2525829 - 2538627
12799