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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_253743_254225_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
253743 - 254225
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGATC
5'SS Class:
major
3'SS Sequence:
CCTTTCTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
CCTTTCTGTACA
Flanking Amino Acid:
ALRERNVLQQIVNLIEETGH
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
70.2
40.3
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
80.4
0.68
0.9
75.4
33.1
Minor 5ss
34.8
-1.7
3.6
50.7
46.2
Minor BPS
51.2
0.03
1.8
63.15
43.1

Associated Gene:

Gene:
MLLT1
Ensembl Gene ID:
ENSAPLG00000003964
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004081
253614 - 281155
27542