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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2554857_2556864_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2554857 - 2556864
Intron Length:
2008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTCG
5'SS Class:
major
3'SS Sequence:
TCCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
CTGTTGTGAACT
Flanking Amino Acid:
QGAHRAGLAKVIPPKEWKPR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1.3
72.3
40.1
Major BPS
75
0.62
1
65.3
41.5
Major PPT
85.1
0.79
0.7
79.4
26.3
Minor 5ss
35.9
-1.6
2.6
42.2
44.4
Minor BPS
49.8
0.06
2.2
71.85
45.3

Associated Gene:

Gene:
KDM4B
Ensembl Gene ID:
ENSAPLG00000005013
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041886
2554653 - 2630475
75823
ENSAPLT00000019501
2554653 - 2630475
75823
ENSAPLT00000005202
2547879 - 2630475
82597