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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2580928_2585272_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2580928 - 2585272
Intron Length:
4345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTACC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TCTTCCTTTTTT
Flanking Amino Acid:
LKKYGIPFDRITQEAGEFMI
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
38.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
42.6
-0.8
2.4
47.1
41.5
Minor BPS
46.1
-0.2
3.6
79.54
43

Associated Gene:

Gene:
KDM4B
Ensembl Gene ID:
ENSAPLG00000005013
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005202
2547879 - 2630475
82597
ENSAPLT00000041886
2554653 - 2630475
75823
ENSAPLT00000019501
2554653 - 2630475
75823