Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2599387_2599877_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2599387 - 2599877

Intron Length:

491

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCTTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TAACCTTTTACT

Flanking Amino Acid:

KAELKAKLLRRIGDEEEDNK

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

70.2

35.7

Major BPS

74.2

0.6

39.4

Major PPT

81.7

0.71

0.8

76.3

32.4

Minor 5ss

30.6

-2.2

3.1

38.6

46.4

Minor BPS

61.3

0.44

1.6

75.6

40.8

Associated Gene:

Gene:

KDM4B

Ensembl Gene ID:

ENSAPLG00000005013

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005202

2547879 - 2630475

82597

ENSAPLT00000041886

2554653 - 2630475

75823

ENSAPLT00000019501

2554653 - 2630475

75823