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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2611200_2614435_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2611200 - 2614435
Intron Length:
3236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CTGTCCATCATT
Flanking Amino Acid:
VVKQETSSDEETFPFSGEED
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
51
0.11
2.1
72.3
45.1

Associated Gene:

Gene:
KDM4B
Ensembl Gene ID:
ENSAPLG00000005013
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005202
2547879 - 2630475
82597
ENSAPLT00000041886
2554653 - 2630475
75823
ENSAPLT00000019501
2554653 - 2630475
75823