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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2616006_2617894_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2616006 - 2617894
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TCATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTAGCATAACT
Flanking Amino Acid:
CAKCCLQVHASCYGIRPDLV
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
0.9
76.8
31.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.6
0.82
0.7
84.8
29.8
Minor 5ss
35
-1.7
3.4
50.7
41.2
Minor BPS
56.2
0.27
2.1
80.5
40.8

Associated Gene:

Gene:
KDM4B
Ensembl Gene ID:
ENSAPLG00000005013
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005202
2547879 - 2630475
82597
ENSAPLT00000041886
2554653 - 2630475
75823
ENSAPLT00000019501
2554653 - 2630475
75823