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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2617972_2618139_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2617972 - 2618139
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTACTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTGTTACTA
Flanking Amino Acid:
SRCSANAWAAECCLCNLRGG
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.5
39.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
83.6
0.76
0.8
77.7
35.4
Minor 5ss
44.4
-0.6
2.9
62
42.6
Minor BPS
49
-0
2.2
67
40.2

Associated Gene:

Gene:
KDM4B
Ensembl Gene ID:
ENSAPLG00000005013
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041886
2554653 - 2630475
75823
ENSAPLT00000019501
2554653 - 2630475
75823
ENSAPLT00000005202
2547879 - 2630475
82597