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Intron Name: Anas_platyrhynchos_platyrhynchos_29_2618196_2618680_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2618196 - 2618680

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTTCTCCCAACC

Flanking Amino Acid:

GGALQMTTDGRWIHIICAIA

Intron Amino Acid Position:

840

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

87.4

Major BPS

71.2

0.53

70.3

31.9

Major PPT

90.7

0.91

0.6

83.6

31.4

Minor 5ss

37.9

-1.4

2.9

52.2

44.4

Minor BPS

54.4

0.12

1.9

72.95

37.4

Associated Gene:

Gene:

KDM4B

Ensembl Gene ID:

ENSAPLG00000005013

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041886

2554653 - 2630475

75823

ENSAPLT00000019501

2554653 - 2630475

75823

ENSAPLT00000005202

2547879 - 2630475

82597