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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2624081_2624210_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2624081 - 2624210
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCTCTTCAATA
Flanking Amino Acid:
CFKHKAANQNIPFRREVTLG
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
75.4
0.57
0.9
69.6
34.5
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
67.7
0.55
1.5
75.09
37.1

Associated Gene:

Gene:
KDM4B
Ensembl Gene ID:
ENSAPLG00000005013
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041886
2554653 - 2630475
75823
ENSAPLT00000019501
2554653 - 2630475
75823
ENSAPLT00000005202
2547879 - 2630475
82597