About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_262696_262735_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
262696 - 262735
Intron Length:
40

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGGAGTCA
5'SS Class:
weak_major
3'SS Sequence:
AAAACAAAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AGTGCCAAAAAA
Flanking Amino Acid:
LKSSSKRPSNSSSKGVKNIL
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.11
1.1
51.6
35.5
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
42.9
-0.4
1.1
29.6
33.1
Minor 5ss
32
-2.1
3.6
41.6
45.6
Minor BPS
44.6
-0.4
2
56.94
41.8

Associated Gene:

Gene:
MLLT1
Ensembl Gene ID:
ENSAPLG00000003964
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004081
253614 - 281155
27542