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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_265061_267763_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
265061 - 267763
Intron Length:
2703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTCTGTTACTA
Flanking Amino Acid:
FRRKLIRAGGVMVMPEGAET
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.2
0.5
0.9
66.2
39.5
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
45.7
-0.3
2.2
59.43
41.3

Associated Gene:

Gene:
MLLT1
Ensembl Gene ID:
ENSAPLG00000003964
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004081
253614 - 281155
27542