About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2652442_2653009_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2652442 - 2653009
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTACTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTTTTCTTTACT
Flanking Amino Acid:
TQRPAMVQTEDEYQFCYQAA
Intron Amino Acid Position:
1878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
74
0.6
1
65.6
41.1
Major PPT
82.2
0.72
0.9
76.7
37.2
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
79.9
1.02
1.5
95.83
29.9

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034561
2652373 - 2748559
96187
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187