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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2659241_2659819_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2659241 - 2659819
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAG
U12 Branch Point Sequence:
TGTTCCAGCATT
Flanking Amino Acid:
MMTKLEEKSRIKCDQYWPGR
Intron Amino Acid Position:
1450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
55.9
0.15
1.5
67
39.8
Major PPT
85.1
0.79
0.8
76.9
37.4
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
48.4
-0
2.2
74.84
41.8

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187