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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2659996_2662753_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2659996 - 2662753
Intron Length:
2758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTAG
5'SS Class:
major
3'SS Sequence:
TGATTTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTGCTGATTT
Flanking Amino Acid:
HSRVILLPIEGIVGSDYINA
Intron Amino Acid Position:
1391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.7
43.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.7
0.51
1
67.3
42.6
Minor 5ss
40.5
-1.1
3.4
55.1
49.1
Minor BPS
53.9
0.2
2.1
80.66
41.5

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187