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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2662878_2665584_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2662878 - 2665584
Intron Length:
2707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCAATTCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTCTCCCAATT
Flanking Amino Acid:
DNLKLSQEYESIDPGQQFTW
Intron Amino Acid Position:
1350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
71.7
0.49
0.9
61.9
39.6
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
48.8
-0
1.9
70
41.2

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187