About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2669809_2672219_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2669809 - 2672219
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAGC
5'SS Class:
major
3'SS Sequence:
CTGTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
EMRRINFQTPDSGLSSPLSD
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
67.1
44.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.3
0.79
0.8
80.7
31.4
Minor 5ss
45.3
-0.5
2.7
61.2
43.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187