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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2672333_2675114_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2672333 - 2675114
Intron Length:
2782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
CIVIAILLYKNKRKDSEPRT
Intron Amino Acid Position:
1279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.9
29.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
33.8
-1.8
3.5
47.5
42.5
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187