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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2678845_2679533_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2678845 - 2679533
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
TTTCTCTCATCA
Flanking Amino Acid:
VQYRTFQLDQVLPKNFKVKM
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
82.5
0.73
0.8
82.5
27.7
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
56.2
0.19
1.8
72.92
38.8

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187