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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_26803_27153_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26803 - 27153
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTTTAACTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCCTTTTAACT
Flanking Amino Acid:
GSPTEDENTSSPPNTLNFNG
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.2
0.68
0.9
71.3
38.5
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
74.5
0.85
1.2
84.55
36.3

Associated Gene:

Gene:
ATCAY
Ensembl Gene ID:
ENSAPLG00000004775
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004927
17024 - 31995
14972