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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2694531_2695452_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2694531 - 2695452
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTCT
U12 Branch Point Sequence:
TTCTCTGCATCA
Flanking Amino Acid:
DPIQVKTQQGVPGQPMNFRA
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
31.2
-1.1
4.2
53.6
43.8
Major PPT
74.7
0.56
0.9
74.2
35.2
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
44.8
-0.3
2.3
62.84
44

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034561
2652373 - 2748559
96187
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187