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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2696035_2698166_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2696035 - 2698166
Intron Length:
2132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
TCCTAATTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACG
Flanking Amino Acid:
IEAVAQITVKSLPKAPGTPV
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
66
39.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.8
0.58
0.9
72.9
36
Minor 5ss
31
-2.2
3.6
41.9
45.2
Minor BPS
82
0.87
1.1
82.56
32

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187