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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2714337_2721481_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2714337 - 2721481
Intron Length:
7145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGTCTTTTCACT
Flanking Amino Acid:
SNGRIKQLRSEGTPIRGGLQ
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
54
0.21
1.7
71.96
39

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027381
2652373 - 2748559
96187