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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2721671_2729533_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2721671 - 2729533
Intron Length:
7863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CACTCTTCATTT
Flanking Amino Acid:
TVHAKLTVLREDQLPPGFPN
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.2
0.55
0.9
67.2
34
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
47.5
-0.1
1.8
60.58
43.9

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187
ENSAPLT00000034010
2652373 - 2748559
96187