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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2730774_2748391_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2730774 - 2748391
Intron Length:
17618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TTTTCCTTAAAG
Flanking Amino Acid:
SVLLIGCVAESPPVFIKKPV
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
81.9
0.72
0.9
83
26
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
83.7
0.92
1.3
85.06
33.6

Associated Gene:

Gene:
PTPRS
Ensembl Gene ID:
ENSAPLG00000005364
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034010
2652373 - 2748559
96187
ENSAPLT00000027381
2652373 - 2748559
96187
ENSAPLT00000005796
2652373 - 2748559
96187
ENSAPLT00000042982
2652373 - 2748559
96187
ENSAPLT00000034561
2652373 - 2748559
96187