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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_276484_279702_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
276484 - 279702
Intron Length:
3219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTATATTCAAAA
Flanking Amino Acid:
LHESFPKPKRVCKEPPYKVE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.6
0.85
0.7
85.2
28.8
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
51.5
0.04
1.8
67.18
38.6

Associated Gene:

Gene:
MLLT1
Ensembl Gene ID:
ENSAPLG00000003964
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004081
253614 - 281155
27542