About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2822905_2824199_F

Intron Information:

Intron Rank:
141460
Intron Class:
major
Intron Phase:
Intron Coordinates:
2822905 - 2824199
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
ACATTGTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.1
0.57
1
65.6
44.7
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026174
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028861
2821783 - 2824586
2804