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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2859920_2861029_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
2859920 - 2861029
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTCTCCCTT
5'SS Class:
weak_minor
3'SS Sequence:
TGCAAGCCCCCAG|C
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCCCATTAGGG
Flanking Amino Acid:
EIPSLFTGESHLLVTPMRPV
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
41.6
-0.5
1.5
38.4
46.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
58.4
0.19
1
46.8
41.1
Minor 5ss
59.6
0.32
2.5
78.6
35.6
Minor BPS
45
-0.5
2.1
53.99
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030175
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030572
2859815 - 2861461
1647