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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2860851_2863787_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2860851 - 2863787
Intron Length:
2937

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCACTGGGG
5'SS Class:
weak_major
3'SS Sequence:
TGGTTGGCATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ATTATCTCAATT
Flanking Amino Acid:
NLSQQEPKPPGWCKKARKTK
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.3
50
43.6
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
50.5
0.01
1.2
54
45.1
Minor 5ss
16.9
-3.8
4
20.2
37.7
Minor BPS
63.5
0.5
1.5
79.21
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018427
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019503
2859300 - 2863891
4592