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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2865197_2866364_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2865197 - 2866364
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGTGACCA
5'SS Class:
weak_major
3'SS Sequence:
GACTCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATCTACCTAACA
Flanking Amino Acid:
GSKTCPLCLRTIYSVKTWVI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.6
0.18
1
48.1
36
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73
0.52
1
69
41.6
Minor 5ss
35.1
-1.7
3
45.5
43.3
Minor BPS
58.5
0.26
1.9
71.82
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020730
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021332
2865147 - 2867290
2144