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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_2876727_2877452_F

Intron Information:

Intron Rank:
125198
Intron Class:
major
Intron Phase:
Intron Coordinates:
2876727 - 2877452
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TCTCCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
80.1
0.68
0.8
73.9
36.6
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
62.4
0.47
1.6
76.8
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017419
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032864
2876615 - 2880401
3787