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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3026029_3028006_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3026029 - 3028006
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGACCG
5'SS Class:
major
3'SS Sequence:
TTATTTCACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
AGAACCTCAATT
Flanking Amino Acid:
LDLERDLREKAEGEVAALNR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
58.8
40.2
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
73.7
0.53
0.9
70.8
34.8
Minor 5ss
28.5
-2.5
3
32.2
35.4
Minor BPS
57.6
0.32
1.6
69.8
40.6

Associated Gene:

Gene:
TPM4
Ensembl Gene ID:
ENSAPLG00000027602
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021765
3025394 - 3031423
6030