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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3028141_3028449_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3028141 - 3028449

Intron Length:

309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTGATTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TCTACATTAAAC

Flanking Amino Acid:

EAEKAADESERGMKVIENRA

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.8

80.1

28.5

Major BPS

0.85

0.9

39.9

Major PPT

82.5

0.73

0.9

77.4

36.8

Minor 5ss

45.4

-0.5

2.7

60.6

44.5

Minor BPS

59.2

0.27

1.8

69.98

40.7

Associated Gene:

Gene:

TPM4

Ensembl Gene ID:

ENSAPLG00000027602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021765

3025394 - 3031423

6030

ENSAPLT00000021405

3022633 - 3031423

8791