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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3028568_3028901_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3028568 - 3028901

Intron Length:

334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATACAAT

U12 Branch Point Sequence:

CTTGATACAATT

Flanking Amino Acid:

AEEADRKYEEVARKLVILEG

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

56.4

0.16

1.3

65.1

38.1

Major PPT

91.8

0.94

0.6

84.7

30.2

Minor 5ss

32.2

-2

40.4

45.3

Minor BPS

42.9

-0.4

1.9

61.59

42.8

Associated Gene:

Gene:

TPM4

Ensembl Gene ID:

ENSAPLG00000027602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021765

3025394 - 3031423

6030

ENSAPLT00000021405

3022633 - 3031423

8791