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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3028973_3029226_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3028973 - 3029226

Intron Length:

254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

TTTTCCCTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

AGAATAGTAATT

Flanking Amino Acid:

RAEERAEVSEVKCSDLEEEL

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

65.2

40.8

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

86.2

0.81

0.6

81.9

22.9

Minor 5ss

32.6

-2

2.7

37.6

Minor BPS

42.6

-0.4

2.1

57.7

38.9

Associated Gene:

Gene:

TPM4

Ensembl Gene ID:

ENSAPLG00000027602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021765

3025394 - 3031423

6030

ENSAPLT00000021405

3022633 - 3031423

8791