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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3029700_3029791_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3029700 - 3029791

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

GTTATCTTATTT

Flanking Amino Acid:

IKILSDKLKEAETRAEFAER

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

86.9

22.7

Major BPS

87.3

0.93

0.8

36.5

Major PPT

88.4

0.86

0.9

94.6

18.5

Minor 5ss

45.5

-0.5

2.8

58.5

40.4

Minor BPS

61.2

0.43

1.6

77.02

39.7

Associated Gene:

Gene:

TPM4

Ensembl Gene ID:

ENSAPLG00000027602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021765

3025394 - 3031423

6030

ENSAPLT00000021405

3022633 - 3031423

8791