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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3029862_3031340_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3029862 - 3031340

Intron Length:

1479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAAAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAA

U12 Branch Point Sequence:

TGCATTTTAAGT

Flanking Amino Acid:

KLEKSIDDLEEKLAQAKEEN

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

82.4

29.8

Major BPS

78.5

0.71

0.9

69.7

37.1

Major PPT

80.4

0.68

0.7

72.7

32.1

Minor 5ss

41.2

-1

2.9

57.1

47.2

Minor BPS

54.1

0.21

1.7

68.35

42.9

Associated Gene:

Gene:

TPM4

Ensembl Gene ID:

ENSAPLG00000027602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021765

3025394 - 3031423

6030

ENSAPLT00000021405

3022633 - 3031423

8791