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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3032064_3032305_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3032064 - 3032305
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TTTCTCGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
AGGGAAGTAACG
Flanking Amino Acid:
AFNATFISTIGIDFKIRTIE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
60.6
40.1
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
85
0.79
0.8
77
37.2
Minor 5ss
29.9
-2.3
3.7
42.2
44.8
Minor BPS
37.7
-1
2.3
40.61
43

Associated Gene:

Gene:
RAB8A
Ensembl Gene ID:
ENSAPLG00000008784
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009155
3031940 - 3035872
3933