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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3033704_3034148_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3033704 - 3034148
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTACCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTGTTCCTACCT
Flanking Amino Acid:
IRNWVRNIEEHASPDVEKMI
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
54
0.1
1
59.7
32.6
Major PPT
73.6
0.53
0.9
70.5
34.8
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
57
0.3
2
79.96
42.2

Associated Gene:

Gene:
RAB8A
Ensembl Gene ID:
ENSAPLG00000008784
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009155
3031940 - 3035872
3933