Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3034239_3034329_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3034239 - 3034329

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTTGTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

AGTTATCCAACT

Flanking Amino Acid:

RQVSREQGEKLAASFGIKFM

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

0.45

0.9

67.6

25.3

Major PPT

81.2

0.7

0.9

80.2

37.3

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

47.2

-0.1

69.67

40.6

Associated Gene:

Gene:

RAB8A

Ensembl Gene ID:

ENSAPLG00000008784

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009155

3031940 - 3035872

3933